Another way to find it is to save the game, exit the game, then reload the game. The "new" planet will be visible. I believe this is another one of those bugs where something happens (in this case a new planet is supposed to be available) but the graphics are not updated until the next turn.
On the good side, they appear to have modified the code so that the window that announces that a civ has been defeated now appears immediately after the civ is defeated and not on the next turn.