Estelyen, perhaps you are not understanding what is happening here. You seem to be confused as to who is sending messages to whom.
You are an alien race that has been given hyperdrive by the Humans. That first message is from the Humans to you - an alien race. You are not communicating with them - they are communicating with you.
As a 'good' race you are threatened (by the Humans), to keep you docile and fearful; as an 'evil' race you are sucked up to, to keep you from attacking.
If you create a custom race that you want to play as a peaceful race, then lean towards a 'good' alignment (and go that way when you choose your ethical alignment) and play it that way. But you will still have to defend yourself, even so. Diplomacy can only go so far against those that will not be 'talked' into peace, so research and utilize those special 'good alignment' weapon and defense techs.
If you create yourself as an evil race - then be prepared to start aggressive, continue aggressive, and finsh aggressive.
Personally, I prefer Neutral alignment.