This may sound silly but how about giving colony ship an 'auto colonize'-button? Scouts can auto-explore, surveyships can auto-survey, miners can auto-mine so it would make sense.
At any rate, it would level the playing field with regards to the early colonization rush. Us, lesser mortals, would have a fair chance against the AI at least.
This was suggested in the GC3 discussion thread (I think it was there, anyway...), and was thrown out by many of us. Firstly, most of us don't need it; secondly, an autocolonizer would be as stupid as possible, choosing a class 1 planet (or worse, a class 5) because it's 3 parsecs closer than that juicy class 26 that isn't even an extreme world. It's not worth the hassle.
If you can't get enough planets you're not scouting well enough. And the fact that I scout with my colony ships only makes the point more valid, not less.